Publications by EEOB faculty in 01 - 12 Feb 2014

February 13, 2014

Allele Distributions at Hybrid Incompatibility Loci Facilitate the Potential for Gene Flow between Cultivated and Weedy Rice in the US

SM Craig, M Reagon, LE Resnick, AL Caicedo. 2014. PLoS ONE 9(1): e86647. DOI: doi:10.1371/journal.pone.0086647

Abstract The accumulation of independent mutations over time in two populations often leads to reproductive isolation. Reproductive isolation between diverging populations may be reinforced by barriers that occur either pre- or postzygotically. Hybrid sterility is the most common form of postzygotic isolation in plants. Four postzygotic sterility loci, comprising three hybrid sterility systems (Sa, s5, DPL), have been recently identified in Oryza sativa. These loci explain, in part, the limited hybridization that occurs between the domesticated cultivated rice varieties, O. sativa spp. japonica and O. sativa spp. indica. In the United States, cultivated fields of japonica rice are often invaded by conspecific weeds that have been shown to be of indica origin. Crop-weed hybrids have been identified in crop fields, but at low frequencies. Here we examined the possible role of these hybrid incompatibility loci in the interaction between cultivated and weedy rice. We identified a novel allele at Sa that seemingly prevents loss of fertility in hybrids. Additionally, we found wide-compatibility type alleles at strikingly high frequencies at the Sa and s5 loci in weed groups, and a general lack of incompatible alleles between crops and weeds at the DPL loci. Our results suggest that weedy individuals, particularly those of the SH and BRH groups, should be able to freely hybridize with the local japonica crop, and that prezygotic factors, such as differences in flowering time, have been more important in limiting weed-crop gene flow in the past. As the selective landscape for weedy rice changes due to increased use of herbicide resistant strains of cultivated rice, the genetic barriers that hinder indica-japonica hybridization cannot be counted on to limit the flow of favorable crop genes into weeds.

Reagon lab


Cellular Metabolic Rate Is Influenced by Life-History Traits in Tropical and Temperate Birds.

Jimenez AG, Van Brocklyn J, Wortman M, Williams JB. 2014. PLoS ONE 9(1): e87349.
DOI: doi:10.1371/journal.pone.0087349

Abstract In general, tropical birds have a 'slow pace of life', lower rates of whole-animal metabolism and higher survival rates, than temperate species. A fundamental challenge facing physiological ecologists is the understanding of how variation in life-history at the whole-organism level might be linked to cellular function. Because tropical birds have lower rates of whole-animal metabolism, we hypothesized that cells from tropical species would also have lower rates of cellular metabolism than cells from temperate species of similar body size and common phylogenetic history. We cultured primary dermal fibroblasts from 17 tropical and 17 temperate phylogenetically-paired species of birds in a common nutritive and thermal environment and then examined basal, uncoupled, and non-mitochondrial cellular O2 consumption (OCR), proton leak, and anaerobic glycolysis (extracellular acidification rates [ECAR]), using an XF24 Seahorse Analyzer. We found that multiple measures of metabolism in cells from tropical birds were significantly lower than their temperate counterparts. Basal and uncoupled cellular metabolism were 29% and 35% lower in cells from tropical birds, respectively, a decrease closely aligned with differences in whole-animal metabolism between tropical and temperate birds. Proton leak was significantly lower in cells from tropical birds compared with cells from temperate birds. Our results offer compelling evidence that whole-animal metabolism is linked to cellular respiration as a function of an animal's life-history evolution. These findings are consistent with the idea that natural selection has uniquely fashioned cells of long-lived tropical bird species to have lower rates of metabolism than cells from shorter-lived temperate species.

Williams lab


Amano, T., Freckleton, R.P., Queenborough, S.A., Doxford, S.W., Smithers, R.J., Sparks, T.H. and Sutherland, W.J. 2014. Proceedings of the Royal Society B: Biological Sciences 281: 20133017. DOI: 10.1098/rspb.2013.3017

Abstract To generate realistic projections of species' responses to climate change, we need to understand the factors that limit their ability to respond. Although climatic niche conservatism, the maintenance of a species's climatic niche over time, is a critical assumption in niche-based species distribution models, little is known about how universal it is and how it operates. In particular, few studies have tested the role of climatic niche conservatism via phenological changes in explaining the reported wide variance in the extent of range shifts among species. Using historical records of the phenology and spatial distribution of British plants under a warming climate, we revealed that: (i) perennial species, as well as those with weaker or lagged phenological responses to temperature, experienced a greater increase in temperature during flowering (i.e. failed to maintain climatic niche via phenological changes); (ii) species that failed to maintain climatic niche via phenological changes showed greater northward range shifts; and (iii) there was a complementary relationship between the levels of climatic niche conservatism via phenological changes and range shifts. These results indicate that even species with high climatic niche conservatism might not show range shifts as instead they track warming temperatures during flowering by advancing their phenology.

Tatsuya Amano and here

Queenborough lab


Dung beetles as indicators of tropical forest restoration success: Is it possible to recover species and functional diversity?

Audino, L. D., J. Louzada, L. Comita. 2014. Biological Conservation 169: 248-257. DOI: 10.1016/j.biocon.2013.11.023

Abstract Tropical forest restoration is becoming increasingly more applied to offset biodiversity loss and maintain ecosystem processes, but knowledge about its efficacy is still limited. We evaluated the success of tropical forest active restoration using dung beetles (Coleoptera: Scarabaeinae) as bioindicators and combining measures of species diversity, composition and functional diversity. We assessed patterns of dung beetles community assembly along a restoration chronosequence and also compared restoration areas with reference (primary and old secondary forest) and degraded (pasture) ecosystems. Species composition in the restoration areas was clearly progressing towards the preserved forests and deviating from the pasture with increasing restoration age. We also found a turnover of open environment specialists and habitat generalists to forest generalists and forest specialist species along the restoration chronosequence. However, the majority of individuals in the older restored habitats were typically forest generalists. Biomass was the only variable that increased with restoration age. Species richness, number of individuals, biomass and functional richness in the restored areas were similar to, or even smaller, than in pastures and substantially lower than forest reference sites. Rarefied richness, functional evenness and functional dispersion did not vary between the habitats. We found that while restored areas have the capacity to host forest-restricted species, 18 years since active restoration has not been long enough to recover a stable and diverse dung beetle assemblage. Our study also demonstrates that measures of composition, species diversity and functional diversity can complement each other and contribute to a better understanding of the efficacy of restoration practices.

Livia was a visiting PhD student with Dr. Comita.

Comita Lab